Perhaps the water from the car wash got into the wiring for the release mechanism. Potentially it just shorted it out, which would have blown a fuse (hopefully). Only problem with this theory is that I'm pretty sure the trunk release mechanism would be wired through the same fuse as the 'central locking system', and if that blew then none of your locks would be working properly.
What model and year is your car? I checked the fuse diagrams for the 2012 and 2013 NA cars, but perhaps the wiring is different on different models and years.
You may need to pull off your hatch trim to check out whats going on under there.
Otherwise you could always bring it back to a dealership, but if they do find water damage then I doubt they would cover it.